| Bioinformatics analysis of RNA sequencing- Eukaryotic mRNA sequencing reference based data analysis, Sequence data QC and quality based filtering, alignment of quality filtered reads onto reference genome, transcript abundance estimation,PCA and Spearman |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Sequencing Analysis |
No |
No |
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| Bioinformatics analysis of Exome sequencing- Sequence data QC and quality filtering, alignment onto the reference genome and variant calling (SNVs and small InDels) and variant annotation. |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Sequencing Analysis |
No |
No |
Book View Calendar |
| Bioinformatics analysis of ChIP sequencing- Sequence data QC and quality based filtering, alignment of QC filtered data onto reference genome, peak detection with reference to control, functional annotation of peaks (genes near to the peaks, GO and pathwa |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Sequencing Analysis |
No |
No |
Book View Calendar |
| Bioinformatics analysis of sc-ATAC sequencing-
ATAC Sequencing Data Analysis, transcription factor target network construction and analysis, ATAC ? seq data providing distinct peaks representing specific active loci, Gene expression analysis, Detection of |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Sequencing Analysis |
No |
No |
Book View Calendar |
| Bioinformatics analysis of sc-RNA sequencing- Principle component analysis, pseudotimes, Population heterogenity analysis, Differential gene expression, identification of statistically significant up/down regulated genes and functional annotation of sign |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Sequencing Analysis |
No |
No |
Book View Calendar |
| Bioinformatics analysis and pipeline for Molecular dynamics simulations- Protein modelling, Docking, library formation and screening, MD simulations, RMSD, RMSF, Radius of gyration, Energy plots analysis, Ligand behaviour through SASA plot, PSA plot and |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
MD simulations and analysis |
No |
No |
Book View Calendar |
| Server available for 15 days |
NCCS |
GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation |
Server |
No |
No |
Book View Calendar |
| GC-MS analysis |
NCCS |
GC- MS SYSTEM |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS analysis |
NCCS |
Q-TRAP |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| Intact Mass |
NCCS |
Orbitrap |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS proteome (digested sample) /metabolite (Extracted) analysis |
NCCS |
Orbitrap |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS proteome analysis (including digestion) |
NCCS |
Orbitrap |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS Quantitative proteome / Metabolome analysis |
NCCS |
Orbitrap |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| Intact Mass |
NCCS |
TripleTOF |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS proteome (digested sample) /metabolite (Extracted) analysis |
NCCS |
TripleTOF |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS proteome analysis (including digestion) |
NCCS |
TripleTOF |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| LC-MS/MS Quantitative proteome / Metabolome analysis |
NCCS |
TripleTOF |
Mass Spectrometry Facility |
Yes |
Yes |
Book View Calendar |
| Flow Cytometer- Analyser |
NCCS |
Cytek Aurora |
Flow Cytometer |
No |
Yes |
Book View Calendar |
| Flow Cytometer- Analyser |
NCCS |
FACS CANTO II |
Flow Cytometer |
No |
Yes |
Book View Calendar |
| Flow Cytometer- Sorter |
NCCS |
MOFLO ASTRIOS EQ |
Flow Cytometer |
Yes |
Yes |
Book View Calendar |
| Flow Cytometer- Sorter |
NCCS |
ARIA III SORP |
Flow Cytometer |
No |
Yes |
Book View Calendar |
| Flow Cytometer- Sorter |
NCCS |
ARIA III STD |
Flow Cytometer |
No |
Yes |
Book View Calendar |
| Flow Cytometer- Sorter |
NCCS |
ARIA II SORP |
Flow Cytometer |
No |
Yes |
Book View Calendar |
| Protein x-ray diffraction |
NCCS |
Rigaku X-ray diffraction setup |
Protein X ray Diffraction |
Yes |
yes |
Book View Calendar |
| In vivo animal Imaging |
NCCS |
IVIS Spectrum CT |
In vivo animal Imaging |
No |
Yes |
Book View Calendar |
| Confocal Microscope |
NCCS |
Leica TCS SP 5 II Spectral Confocal Microscope |
Microscopy |
Yes |
YES |
Book View Calendar |
| Confocal Microscope |
NCCS |
Zeiss LSM880 High Resolution & Sensitive Confocal Workstation with Super Resolution Imaging Capabilities |
Microscopy |
Yes |
Yes |
Book View Calendar |
| Confocal Microscope |
NCCS |
Confocal based High Content Analysis System |
Microscopy |
Yes |
Yes |
Book View Calendar |
| Confocal Microscope |
NCCS |
Olympus FV 3000 High Speed Spectral Confocal Microscope |
Microscopy |
Yes |
Yes |
Book View Calendar |
| Confocal Microscope |
NCCS |
Olympus SpinSR 10-Spinning Disc High Resolution Microscope |
Microscopy |
Yes |
Yes |
Book View Calendar |
| Scanning Electron Microscope |
NCCS |
Scanning Electron Microscope |
Scanning Electron Microscopy |
Yes |
Yes |
Book View Calendar |
| Centrifugation |
NCCS |
Beckman Coulter |
Ultra-centrifuge |
Yes |
Yes |
Book View Calendar |
| Micro-CT |
NCCS |
MicroCT |
Micro-CT |
No |
No |
Book View Calendar |
