Dept
DEPARTMENT OF BIOTECHNOLOGY
MINISTRY OF SCIENCE & TECHNOLOGY
GOVERNMENT OF INDIA
Dept. of BMST
Govt. of India
G2Amrit

Instruments

Experiment Institute Equipment/Service Pre-booking
Consultation		 Technical
Support		 Action
Bioinformatics analysis of RNA sequencing- Eukaryotic mRNA sequencing reference based data analysis, Sequence data QC and quality based filtering, alignment of quality filtered reads onto reference genome, transcript abundance estimation,PCA and Spearman NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Bioinformatics analysis of Exome sequencing- Sequence data QC and quality filtering, alignment onto the reference genome and variant calling (SNVs and small InDels) and variant annotation. NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Bioinformatics analysis of ChIP sequencing- Sequence data QC and quality based filtering, alignment of QC filtered data onto reference genome, peak detection with reference to control, functional annotation of peaks (genes near to the peaks, GO and pathwa NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Bioinformatics analysis of sc-ATAC sequencing- ATAC Sequencing Data Analysis, transcription factor target network construction and analysis, ATAC ? seq data providing distinct peaks representing specific active loci, Gene expression analysis, Detection of NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Bioinformatics analysis of sc-RNA sequencing- Principle component analysis, pseudotimes, Population heterogenity analysis, Differential gene expression, identification of statistically significant up/down regulated genes and functional annotation of sign NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Bioinformatics analysis and pipeline for Molecular dynamics simulations- Protein modelling, Docking, library formation and screening, MD simulations, RMSD, RMSF, Radius of gyration, Energy plots analysis, Ligand behaviour through SASA plot, PSA plot and NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
Server available for 15 days NCCS GPU Computing HP Proliant SL6500, SGI Altix XE 1300 Cluster, HP Z820 High End Workstation, I Mac, HP Elite 8200 CMT PC, HP Z800 High End Workstation No No Book View Calendar
GC-MS analysis NCCS GC- MS SYSTEM Yes Yes Book View Calendar
LC-MS/MS analysis NCCS Q-TRAP Yes Yes Book View Calendar
Intact Mass NCCS Orbitrap Yes Yes Book View Calendar
LC-MS/MS proteome (digested sample) /metabolite (Extracted) analysis NCCS Orbitrap Yes Yes Book View Calendar
LC-MS/MS proteome analysis (including digestion) NCCS Orbitrap Yes Yes Book View Calendar
LC-MS/MS Quantitative proteome / Metabolome analysis NCCS Orbitrap Yes Yes Book View Calendar
Intact Mass NCCS TripleTOF Yes Yes Book View Calendar
LC-MS/MS proteome (digested sample) /metabolite (Extracted) analysis NCCS TripleTOF Yes Yes Book View Calendar
LC-MS/MS proteome analysis (including digestion) NCCS TripleTOF Yes Yes Book View Calendar
LC-MS/MS Quantitative proteome / Metabolome analysis NCCS TripleTOF Yes Yes Book View Calendar
Flow Cytometer- Analyser NCCS Cytek Aurora No Yes Book View Calendar
Flow Cytometer- Analyser NCCS FACS CANTO II No Yes Book View Calendar
Flow Cytometer- Sorter NCCS MOFLO ASTRIOS EQ Yes Yes Book View Calendar
Flow Cytometer- Sorter NCCS ARIA III SORP No Yes Book View Calendar
Flow Cytometer- Sorter NCCS ARIA III STD No Yes Book View Calendar
Flow Cytometer- Sorter NCCS ARIA II SORP No Yes Book View Calendar
Protein x-ray diffraction NCCS Rigaku X-ray diffraction setup Yes yes Book View Calendar
In vivo animal Imaging NCCS IVIS Spectrum CT No Yes Book View Calendar
Confocal Microscope NCCS Leica TCS SP 5 II Spectral Confocal Microscope Yes YES Book View Calendar
Confocal Microscope NCCS Zeiss LSM880 High Resolution & Sensitive Confocal Workstation with Super Resolution Imaging Capabilities Yes Yes Book View Calendar
Confocal Microscope NCCS Confocal based High Content Analysis System Yes Yes Book View Calendar
Confocal Microscope NCCS Olympus FV 3000 High Speed Spectral Confocal Microscope Yes Yes Book View Calendar
Confocal Microscope NCCS Olympus SpinSR 10-Spinning Disc High Resolution Microscope Yes Yes Book View Calendar
Scanning Electron Microscope NCCS Scanning Electron Microscope Yes Yes Book View Calendar
Centrifugation NCCS Beckman Coulter Yes Yes Book View Calendar
Micro-CT NCCS MicroCT No No Book View Calendar
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