| DNA Extraction from blood (Automated Method) |
NIBMG |
QIAsymphony |
Experimental |
No |
Yes |
Book View Calendar |
| DNA Extraction from tissue (Automated Method) |
NIBMG |
QIAsymphony |
Experimental |
No |
Yes |
Book View Calendar |
| Tissue Total RNA Isolation using Qiagen RNAEasy MiniKit |
NIBMG |
NA |
Experimental |
No |
Yes |
Book View Calendar |
| Cellular Total RNA Isolation using PureLink Trizol Plus RNAEasy MiniKit |
NIBMG |
NA |
Experimental |
No |
Yes |
Book View Calendar |
| DNA & RNA Extraction from same tissue |
NIBMG |
NA |
Experimental |
No |
Yes |
Book View Calendar |
| Tissue Total RNA Isolation using PureLink Trizol Plus RNAEasy MiniKit |
NIBMG |
NA |
Experimental |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [100X) on S4 low cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [100X) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [100X) on S1 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [100X) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [Agilent based] (100X) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Core Exome Sequencing [Illumina based] (100X) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat (HMR) (50 million PE) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat (HMR) (50 million PE) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat (HMR) (50 million PE) on S1 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat (HMR) (50 million PE) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat [Illumina based] (50M PE) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Bacteria [Illumina based] (100M PE) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat [Illumina based] (50M PE) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat [Roche based] (100M PE) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat [Illumina based] (100M PE) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Ribo-depleted Total Transcriptome Sequencing-Human/Mouse/Rat [Illumina based] (100M PE) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| mRNA sequencing (20M reads PE) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| mRNA Sequencing [Roche based] (50Million Paired-End Reads) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| mRNA Sequencing [Roche based] (50Million Paired-End Reads) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| mRNA Sequencing [Roche based] (100Million Paired-End Reads) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| mRNA Sequencing [Roche based] (100Million Paired-End Reads) on S2 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Bacterial Whole Genome Sequencing (1gb data) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Whole Genome Sequencing (30X) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Human Whole Genome Sequencing (60X) on S4 flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| 16s rRNA (v3-v4) Microbiome Sequencing on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| 16s rRNA (v3-v4) Microbiome Sequencing |
NIBMG |
MiSeq |
Genomics |
No |
Yes |
Book View Calendar |
| Shotgun Microbiome Sequencing (10M reads) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Targeted Sequencing (custom Panel) on SP flow cell for Novaseq6000 |
NIBMG |
Novaseq6000/MiSeq |
Genomics |
Yes |
Yes |
Book View Calendar |
| ChIP sequencing (20M reads PE) on SP flow cell |
NIBMG |
Novaseq6000 |
Genomics |
No |
Yes |
Book View Calendar |
| Infinium GSA |
NIBMG |
iScan |
Genomics |
No |
Yes |
Book View Calendar |
| Omni 2.5 |
NIBMG |
iScan |
Genomics |
No |
Yes |
Book View Calendar |
| EPIC Methylation |
NIBMG |
iScan |
Genomics |
No |
Yes |
Book View Calendar |
| Omni 5.0 |
NIBMG |
iScan |
Genomics |
No |
Yes |
Book View Calendar |
| illumina NovaSeq Sequencing |
NIBMG |
Novaseq6000 |
Genomics |
Yes |
Yes |
Book View Calendar |
| illumina MiSeq Sequencing |
NIBMG |
MiSeq |
Genomics |
Yes |
Yes |
Book View Calendar |
| Genotyping array - Genotype calling - upto 500K probes - Illumina
Genotype call report-Per sample basis |
NIBMG |
NGS data analysis |
Genomics |
No |
Yes |
Book View Calendar |
| Genotyping array - Genotype calling - more than 500K probes - Illumina
Genotype call report - Per sample basis |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Hotspot targeted sequening data analysis - Illumina
Annotated Hotspot mutation call - Only SNP/Indel - per sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Exome sequencing data analysis - Somatic - Paired - Illumina
Annotated Somatic variant calls - Only SNP/Indel - per paired samples |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Exome sequencing data analysis - Illumina
Annotated Germline variant calls - Only SNP/Indel - per sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Exome sequencing data analysis - Somatic - Tumor only - Illumina
Annotated Somatic variant calls - Only SNP/Indel - per sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Whole genome sequencing data analysis - Somatic - Paired - Illumina
Annotated Somatic variant calls - Only SNP/Indel - per paired sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Whole genome sequencing data analysis - Illumina
Annotated Germline variant calls - Only SNP/Indel - per sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| mRNAseq analysis (Input Fastq)- Single sample / group - Illumina
Gene expression count - per sample |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| mRNAseq analysis (Input Fastq) - Paired sample / group - Illumina
Differential expression analysis - per group |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Differential gene (mRNA) expression annotation analysis - Illumina
Pathway analysis - per job |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Project consultation on NGS data analysis / study design
Per hour of consultation time |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Project consultation on statistical data analysis / study design
Per hour of consultation time |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Custom analysis - Based on discussion and approval
Per day of custom analysis manpower time |
NIBMG |
NGS data analysis |
Genomics |
No |
No |
Book View Calendar |
| Training of programming, data management, server software installation and data analysis
Per month of stay and training in NIBMG, Guest house charges additional as per prevailing rate, maximum two months. |
NIBMG |
Data Center |
Genomics |
No |
No |
Book View Calendar |
| Anti-sense oligo/morpholino (one-cell stage) or CRISPR (one-cell stage) or Plasmid (one-cell stage) or Cells (at 2dpf stage) (Needs to provide own reagent and IAEC approved).
Service includes all needed items for Microinjections, Imaging, Maintenance and |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Mirco-injections with Anti-sense oligo/morpholino (one-cell stage) or CRISPR (one-cell stage) or Plasmid (one-cell stage) or Cells (at 2dpf stage) (Needs to provide own reagent and IAEC approved).
Deep Phenotypic Study (Cryotome, staining, Slide preparat |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Mirco-injections with Anti-sense oligo/morpholino (one-cell stage) or CRISPR (one-cell stage) or Plasmid (one-cell stage) or Cells (at 2dpf stage) (Needs to provide own reagent and IAEC approved).
Confocal Imaging (per hour) |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Drug screening including Drug treatment, Dechorionation, Screening and imaging, Maintenance and care (Needs to provide own drug and IAEC approved.) |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Drug screening: Confocal imaging |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Behavioural Studies Using ZANTIKS System Analyser, Data analysis, Maintenance and care |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| IAEC Approval |
NIBMG |
Zebrafish facility |
Experimental |
No |
Yes |
Book View Calendar |
| Microbiome DNA/RNA isolation (Automated) |
NIBMG |
Microbiome Facility |
Experimental |
No |
No |
Book View Calendar |
| Project Consultation: Study Design and Data Analysis
Per hour consultation time |
NIBMG |
Microbiome Facility |
Consultation |
No |
No |
Book View Calendar |
| 16S data analysis*
(Deliverables: OTU/ASV, L2-L6, Core Diversity, Biome file) |
NIBMG |
Microbiome Facility |
Analytical |
No |
No |
Book View Calendar |
| Shotgun data analysis*
Based on discussion with facility-in-charge |
NIBMG |
Microbiome Facility |
Analytical |
Yes |
No |
Book View Calendar |
| Bioplex use |
NIBMG |
Bio-plex |
Bioplexing |
No |
No |
Book View Calendar |
| FACS Analysis |
NIBMG |
FACS ARIA Fusion |
Flow Cytometry |
No |
No |
Book View Calendar |
| FACS sorting |
NIBMG |
FACS ARIA Fusion |
Flow Cytometry |
No |
No |
Book View Calendar |
| DD PCR per run; reagent kit not included |
NIBMG |
QX-200 |
Experimental |
No |
No |
Book View Calendar |
| Ultracentrifuge run per hour; tube not included |
NIBMG |
Optima XPM-100 |
Experimental |
No |
No |
Book View Calendar |
| Microscopy Facility |
NIBMG |
Confocal Microscope |
Microscopy and Imaging |
No |
No |
Book View Calendar |
| Protein identification from single spot/band |
NIBMG |
Mass Spectrometry Orbitrap |
Proteomics |
No |
No |
Book View Calendar |
| Protein complexes (pull down) identification |
NIBMG |
Mass Spectrometry Orbitrap |
Proteomics |
No |
No |
Book View Calendar |
| LC-MS/MS proteome analysis (digested sample) [ORBITRAP MS/MS], Run 180 mins |
NIBMG |
Mass Spectrometry Orbitrap |
Proteomics |
No |
No |
Book View Calendar |
| LC-MS/MS proteome analysis (including sample preparation) [ORBITRAP MS/MS, Run 180 mins |
NIBMG |
Mass Spectrometry Orbitrap |
Proteomics |
No |
Yes |
Book View Calendar |
